View source for IPS prediction (analysis)

;Analysis title
:[[File:Binding-regions-IPS-prediction-icon.png]] IPS prediction
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|ru.biosoft.bsa.analysis.bindingRegions.IPSPrediction}}
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]

==== Description ====
IPS-prediction and tag density

==== Parameters: ====

* '''Sequences collection''' – Select a source of nucleotide sequences
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
* '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks
* '''Matrix''' – Path to positional weight matrix
* '''Species''' – Select a taxonomical species
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
* '''Output table''' – Table with charts will be created in this location

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]