View source for Common and IPS scores correlation (analysis)

;Analysis title
:[[File:Default-analysis-icon.png]] Common and IPS scores correlation
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.bindingregions.analysis.CommonAndIPSCorrelation}}
;Plugin
:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]

==== Description ====
Correlation between common score and IPS-score for best IPS-sites in single Chip-Seq track

==== Parameters: ====

* '''Sequences collection''' – Select a source of nucleotide sequences
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
* '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
* '''Minimal region length''' – Minimal length of sequence region
* '''Matrix''' – Path to positional weight matrix
* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]