Difference between revisions of "Chromosome enrichment (analysis)"
From BioUML platform
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* '''Genome''' – Genome | * '''Genome''' – Genome | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
| − | ** '''Sequence collection''' – | + | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected |
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ||
* '''Output table''' – Output table | * '''Output table''' – Output table | ||
Revision as of 17:15, 6 June 2013
- Analysis title
- File:BSA-Chromosome-enrichment-icon.png Chromosome enrichment
- Provider
- Institute of Systems Biology
- Class
ChromosomeEnrichment- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Find chromosomes enriched with given genes
Parameters:
- Input genes – Input genes
- Genome – Genome
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Genome ID string – Something like 'hg18' or 'mm6'
- Output table – Output table
- Output image – Output image
