Difference between revisions of "Create matrix by mixture of normal components (analysis)"

Revision as of 15:31, 10 June 2013

Analysis title: File:Binding-regions-Create-matrix-by-mixture-of-normal-components-icon.png Create matrix by mixture of normal components
Provider: Institute of Systems Biology
Class: CreateMatrixByMixture
Plugin: ru.biosoft.bsa (Bio-sequences analyses plugin)

Calculation of matrix by using mixture of normal components for maximal IPS scores

Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
TF class – TF class in Wingender classification (like '2.1.1.1.4')
P-value – P-value
Max iterations – Number of iterations for algorithm
Number of matrices – How many matrices will be constructed
Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
Consensus – Specify the consensus of initial matrix
Matrix path – Specify the path to the initial matrix
Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
Matrix name prefix – All matrices will be created with given prefix

@@ Line 14: / Line 14: @@
 * '''Input track''' – Select input ChIP-seq track (must be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
-* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>1.1.2.1<nowiki>'</nowiki>)
+* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
 * '''P-value''' – P-value
 * '''Max iterations''' – Number of iterations for algorithm