Difference between revisions of "Distinct TF classes (analysis)"

Revision as of 15:31, 10 June 2013

Analysis title: File:Binding-regions-Distinct-TF-classes-icon.png Distinct TF classes
Provider: Institute of Systems Biology
Class: DistinctTFClasses
Plugin: ru.biosoft.bsa (Bio-sequences analyses plugin)

Distinct TF classes: Identification of their binding regions as cisModules2 of their repeated tracks

Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
Species – Select a taxonomical species
Minimal number of overlaps – Minimal number of overlaps
Path to output folder – Output folder will be created under this location