Difference between revisions of "Non-merged ChIP-Seq tracks summary (analysis)"
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==== Description ==== | ==== Description ==== | ||
Revision as of 13:38, 17 June 2013
- Analysis title
Non-merged ChIP-Seq tracks summary
- Provider
- Institute of Systems Biology
- Class
NonmergedChIPSeqSummary- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Summary of non-merged ChIP-Seq tracks (creation of tables: 'summaryOfTracks', 'summaryOfCellLines', 'summaryOfTfClasses', 'countsOfTfClassesInCellLines')
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
- TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
- Path to output folder – Output folder will be created under this location
