Difference between revisions of "Create matrix by mixture of normal components (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Input track''' – Select input | + | * '''Input track''' – Select input track (it has to contain the merged binding regions; it can be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis) |
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | * '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | ||
* '''Minimal region length''' – Minimal length of sequence region | * '''Minimal region length''' – Minimal length of sequence region | ||
* '''P-value''' – P-value | * '''P-value''' – P-value | ||
| − | * '''Max iterations''' – | + | * '''Max iterations''' – Maximal number of iterations for algorithm |
* '''Number of matrices''' – How many matrices will be constructed | * '''Number of matrices''' – How many matrices will be constructed | ||
* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus | * '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus | ||
Revision as of 16:17, 11 December 2014
- Analysis title
Create matrix by mixture of normal components
- Provider
- Institute of Systems Biology
- Class
CreateMatrixByMixture- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Calculation of matrix by using mixture of normal components for maximal IPS scores
Parameters:
- Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Minimal region length – Minimal length of sequence region
- P-value – P-value
- Max iterations – Maximal number of iterations for algorithm
- Number of matrices – How many matrices will be constructed
- Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
- Consensus – Specify the consensus of initial matrix
- Matrix path – Specify the path to the initial matrix
- Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
- Matrix name prefix – All matrices will be created with given prefix
