Difference between revisions of "Matrix comparison (analysis)"

Revision as of 16:17, 11 December 2014

Analysis title

Matrix comparison

Provider

Institute of Systems Biology

Class

MatrixComparison

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Comparison of matrices by given site model type

Parameters:

• Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Is around summit – Is around summit
• Minimal region length – Minimal length of sequence region
• % of best sites – Best sites percentage
• Type of site model – Type of site model that will be used for matrix derivation
• Matrices – Select matrices
• Are also all matrices – Would you like to consider also all matrices selected?
• Path to output folder – Output folder will be created under this location