Difference between revisions of "Distinct TF classes (analysis)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.DistinctTFClasses}} |
;Plugin | ;Plugin | ||
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==== Description ==== | ==== Description ==== | ||
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* '''Species''' – Select a taxonomical species | * '''Species''' – Select a taxonomical species | ||
* '''Minimal number of overlaps''' – Minimal number of overlaps | * '''Minimal number of overlaps''' – Minimal number of overlaps | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:19, 25 August 2015
- Analysis title
Distinct TF classes
- Provider
- Institute of Systems Biology
- Class
DistinctTFClasses- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Distinct TF classes: Identification of their binding regions as cisModules2 of their repeated tracks
[edit] Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Minimal number of overlaps – Minimal number of overlaps
- Path to output folder – Output folder will be created under this location when it doesn't exist
