Difference between revisions of "Import HOCOMOCO (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | Imports HOCOMOCO database from flat files | + | Imports HOCOMOCO database from flat files. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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* '''PWM flat file''' – Position weight matrix flat file | * '''PWM flat file''' – Position weight matrix flat file | ||
* '''Thresholds table''' – Table with model thresholds | * '''Thresholds table''' – Table with model thresholds | ||
| + | * '''Thresholds folder''' – Thresholds folder | ||
* '''Uniprot matching table''' – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id | * '''Uniprot matching table''' – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id | ||
* '''Resulting matrix collection''' – Path to resulting matrix collection | * '''Resulting matrix collection''' – Path to resulting matrix collection | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Import HOCOMOCO
- Provider
- Institute of Systems Biology
- Class
ImportHocomoco- Plugin
- biouml.plugins.gtrd (GTRD)
[edit] Description
Imports HOCOMOCO database from flat files.
[edit] Parameters:
- PCM flat file – Position count matrix flat file
- PWM flat file – Position weight matrix flat file
- Thresholds table – Table with model thresholds
- Thresholds folder – Thresholds folder
- Uniprot matching table – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
- Resulting matrix collection – Path to resulting matrix collection
- Resulitng site model collection – Path to resulting site model collection
- Resulting factor collection – Resulting factor collection
