Difference between revisions of "ChIP-seq peak profile (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File:ChIP-seq-peak-profile | + | :[[File:ChIP-seq-ChIP-seq-peak-profile-icon.png]] ChIP-seq peak profile |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.chipseqprofile.ChIPSeqProfileAnalysis}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | This analysis | + | This analysis computes probability profiles for Chip-seq peaks. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:ChIP-seq (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
ChIP-seq peak profile
- Provider
- Institute of Systems Biology
- Class
ChIPSeqProfileAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
This analysis computes probability profiles for Chip-seq peaks.
[edit] Parameters:
- Peak track – Track with ChIP-seq peaks
- Tag track – Track with aligned tags (reads)
- Fragment size – Mean size of DNA fragments used in immunoprecipitation
- Sigma – Sigma parameter used to model peak shape
- Error rate – Error rate
- Profiled track – Profiled track
