Difference between revisions of "Quality control analysis"
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==== Description ==== | ==== Description ==== | ||
| − | Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications | + | Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications. |
==== Parameters: ==== | ==== Parameters: ==== | ||
* '''Data Type''' – Select data Type | * '''Data Type''' – Select data Type | ||
| + | * '''Type of combined peaks''' – Type of combined peaks | ||
* '''Minimal length of binding region''' – Minimal length of binding region | * '''Minimal length of binding region''' – Minimal length of binding region | ||
* '''Maximal length of binding region''' – Maximal length of binding region | * '''Maximal length of binding region''' – Maximal length of binding region | ||
| Line 31: | Line 32: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:ChIP-seq (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Quality control analysis
- Provider
- Institute of Systems Biology
- Class
QualityControlAnalysis- Plugin
- biouml.plugins.gtrd (GTRD)
[edit] Description
Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications.
[edit] Parameters:
- Data Type – Select data Type
- Type of combined peaks – Type of combined peaks
- Minimal length of binding region – Minimal length of binding region
- Maximal length of binding region – Maximal length of binding region
- FPCM threshold – FPCM threshold
- Do calculate AUCs – Do calculate AUCs
- Path to folder with site models – Path to folder with site models
- Site model name – Please, select site model name
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Parameters for case of several folders – Please, determine parameters for case of several folders
- Paths to data sets – Paths to data sets
- Parameters for case of single folder – Please, determine parameters for case of single folder
- Path to folder with files or tracks – Path to folder with bed-files or tracks
- File names – Select file names
- Path to output folder – Path to output folder
