Difference between revisions of "Parameter identifiability (table) (analysis)"

Latest revision as of 18:14, 9 December 2020

Analysis title

Parameter identifiability (table)

Provider

Institute of Systems Biology

Class

IdentifiabilityOnTableAnalysis

Plugin

biouml.plugins.optimization (Optimization plug-in)

[edit] Description

Parameter identifiability which uses tables as input.

[edit] Parameters:

• Diagram – Path to input diagram
• Parameters table – Table with list of parameters to check identifiability (must contain "Min", "Max", "Val" columns)
• Observables table – Table with data about observables values and time
• Time column – Name of the column with time values from the "Observbles table" (will search for "time" if not selected)
• Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
• Maximal deviation – Maximal deviation from initial objective function value (delta)
• Plot element type (expert) – Type of created result plot elements
• Optimization method parameters – Optimization method parameters
  • Optimization method name – Name of optimization method to use
  • Number of iterations – Number of iterations during optimization
  • Populations size – Populations size
  • Calculation accuracy – Calculation accuracy
  • Grid length – Grid length
  • Grid width – Grid width
  • Number of particles – The total number of particles
• Weight method (expert) – Method which will be used to evaluate weights for objective function
• Weights table (expert) – Table with data about weights for observable values
• Weight column (expert) – Name of the column with weights from the "Weights table" (will set weights to 1.0 if not selected)
• Output path – Path to the output table