Difference between revisions of "Gathering genome statistics (analysis)"
From BioUML platform
m (Protected "Gathering genome statistics (analysis)": Autogenerated page ([edit=sysop] (indefinite))) |
(Automatic synchronization with BioUML) |
||
| (2 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Gathering genome statistics |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.GatheringGenomeStatistics}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
| Line 16: | Line 16: | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:19, 25 August 2015
- Analysis title
Gathering genome statistics
- Provider
- Institute of Systems Biology
- Class
GatheringGenomeStatistics- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Preliminary identification of the auxiliary information about genome (creation of tracks: '_chromosomeGaps', '_chromosomeLengths', '_genes', 'summaryOfGenes')
[edit] Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Path to output folder – Output folder will be created under this location when it doesn't exist
