Difference between revisions of "Non-merged ChIP-Seq tracks summary (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Non-merged ChIP-Seq tracks summary |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.NonmergedChIPSeqSummary}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
| Line 13: | Line 13: | ||
==== Parameters: ==== | ==== Parameters: ==== | ||
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* '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks | * '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks | ||
* '''Species''' – Select a taxonomical species | * '''Species''' – Select a taxonomical species | ||
* '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column) | * '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column) | ||
* '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column) | * '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column) | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:20, 25 August 2015
- Analysis title
Non-merged ChIP-Seq tracks summary
- Provider
- Institute of Systems Biology
- Class
NonmergedChIPSeqSummary- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Summary of non-merged ChIP-Seq tracks (creation of tables: 'summaryOfTracks', 'summaryOfCellLines', 'summaryOfTfClasses', 'countsOfTfClassesInCellLines')
[edit] Parameters:
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
- TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
- Path to output folder – Output folder will be created under this location when it doesn't exist
