Difference between revisions of "Create matrix by mixture of normal components (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Create matrix by mixture of normal components |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.CreateMatrixByMixture}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
| Line 13: | Line 13: | ||
==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Input track''' – Select input | + | * '''Input track''' – Select input track (it has to contain the merged binding regions; it can be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis) |
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | * '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | ||
| − | * '''P-value''' – P-value | + | * '''Minimal region length''' – Minimal length of sequence region |
| − | * ''' | + | * '''P-value threshold''' – P-value threshold |
| + | * '''Maximal number of iterations''' – Maximal number of iterations in algorithm | ||
* '''Number of matrices''' – How many matrices will be constructed | * '''Number of matrices''' – How many matrices will be constructed | ||
* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus | * '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus | ||
| − | * '''Consensus''' – Specify the consensus | + | * '''Consensus''' – Specify the consensus |
* '''Matrix path''' – Specify the path to the initial matrix | * '''Matrix path''' – Specify the path to the initial matrix | ||
* '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists) | * '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists) | ||
| − | * '''Matrix name prefix''' – All matrices will be created with given prefix | + | * '''Matrix name prefix''' – All matrices will be created with given name prefix |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 19:00, 13 February 2017
- Analysis title
Create matrix by mixture of normal components
- Provider
- Institute of Systems Biology
- Class
CreateMatrixByMixture- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Calculation of matrix by using mixture of normal components for maximal IPS scores
[edit] Parameters:
- Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Minimal region length – Minimal length of sequence region
- P-value threshold – P-value threshold
- Maximal number of iterations – Maximal number of iterations in algorithm
- Number of matrices – How many matrices will be constructed
- Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
- Consensus – Specify the consensus
- Matrix path – Specify the path to the initial matrix
- Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
- Matrix name prefix – All matrices will be created with given name prefix
