Difference between revisions of "Heterozygous site caller (analysis)"
From BioUML platform
(Added 'Autogenerated pages' category) |
(Automatic synchronization with BioUML) |
||
| (11 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
| − | Find heterozygous sites from RNA-seq data | + | ;Analysis title |
| + | :[[File:Default-analysis-icon.png]] Heterozygous site caller | ||
| + | ;Provider | ||
| + | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.HeterozygousSiteCaller}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
| + | |||
| + | ==== Description ==== | ||
| + | Find heterozygous sites from RNA-seq data. | ||
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 10: | Line 20: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Mutations (analyses group)]] |
| + | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Heterozygous site caller
- Provider
- Institute of Systems Biology
- Class
HeterozygousSiteCaller- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Find heterozygous sites from RNA-seq data.
[edit] Parameters:
- Alignment track – BAM track with aligned reads
- Target track – Restrict search to sites from this track
- Min reads – Minimal number of reads at genomic position to be considered
- Minimal fraction of second allele – Minimal fraction of second allele
- Output track – Output track
