Difference between revisions of "Cluster track (analysis)"
From BioUML platform
m (Protected "Cluster track (analysis)": Autogenerated page ([edit=sysop] (indefinite))) |
(Automatic synchronization with BioUML) |
||
| (2 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Operations-with-genomic-tracks-Cluster-track-icon.png]] Cluster track |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| Line 9: | Line 9: | ||
==== Description ==== | ==== Description ==== | ||
| − | + | ru/biosoft/bsa/analysis/resources/cluster_track_analysis.html | |
==== Parameters: ==== | ==== Parameters: ==== | ||
* '''Input track''' – Input track | * '''Input track''' – Input track | ||
| + | * '''Genome''' – Reference genome | ||
| + | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
| + | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ||
* '''Max distance''' – Maximum allowed distance between adjacent sites in cluster | * '''Max distance''' – Maximum allowed distance between adjacent sites in cluster | ||
* '''Cluster size''' – Minimal size of cluster | * '''Cluster size''' – Minimal size of cluster | ||
| Line 19: | Line 22: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Operations with genomic tracks (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Cluster track
- Provider
- Institute of Systems Biology
- Class
ClusterTrack- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
ru/biosoft/bsa/analysis/resources/cluster_track_analysis.html
[edit] Parameters:
- Input track – Input track
- Genome – Reference genome
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Max distance – Maximum allowed distance between adjacent sites in cluster
- Cluster size – Minimal size of cluster
- Cluster track – Resulting track with cluster sites
