Difference between revisions of "Simulation analysis"

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;Analysis title
 
;Analysis title
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:[[File:Simulation-Simulation-analysis-icon.png]] Simulation analysis
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:[[File:Differential-algebraic-equations-Simulation-analysis-icon.png]] Simulation analysis
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
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==== Description ====
 
==== Description ====
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Simulate model
+
Simulate model.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''Simulation engine name''' – Simulation engine name.
 
* '''Simulation engine name''' – Simulation engine name.
 
* '''Simulation engine''' – Simulation engine
 
* '''Simulation engine''' – Simulation engine
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** '''Initial time''' – Initial time.
 
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** '''Completion time''' – Completion time.
 
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** '''Time increment''' – Time increment.
 
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** '''Flat similar submodels''' – Flat submodels if possible.
 
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** '''Main engine''' – Main simulation engine.
 
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*** '''engineName''' – engineName
 
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*** '''initialTime''' – initialTime
 
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*** '''completionTime''' – completionTime
 
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*** '''timeIncrement''' – timeIncrement
 
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*** '''Time scale''' – Time description.
 
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*** '''solverName''' – solverName
 
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*** '''simulatorOptions''' – simulatorOptions
 
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**** '''Absolute tolerance''' – Absolute tolerance.
 
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**** '''Relative tolerance''' – Relative tolerance.
 
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**** '''Statistics mode''' – Statistics mode.
 
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**** '''Integration method''' – Integration method (ADAMS or BDF)
 
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**** '''Inner linear solver type''' – Inner linear solver type
 
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**** '''Jacobian approximation type''' – Jacobian approximation type
 
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**** '''Steps limit''' – Limitation for solver steps count
 
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**** '''Minimum time step''' – Minimum time step.
 
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**** '''Maximum time step inverted''' – 1 / maximum time step.
 
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**** '''Mu''' – Upper bandwidth of Banded Jacobian
 
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**** '''Ml''' – Lower bandwidth of Banded Jacobian
 
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**** '''Detect incorrect numbers (NaNs and Infs''' – If true then simulation will end when NaN or Infinity encountered
 
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** '''Simulation engines''' – Agent engines.
 
 
* '''Skip points''' (expert) – Number of points to skip
 
* '''Skip points''' (expert) – Number of points to skip
 
* '''Output start time''' (expert) – Output start time for non-uniform simulation
 
* '''Output start time''' (expert) – Output start time for non-uniform simulation
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[[Category:Analyses]]
 
[[Category:Analyses]]
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[[Category:Simulation (analyses group)]]
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[[Category:Differential algebraic equations (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Differential-algebraic-equations-Simulation-analysis-icon.png Simulation analysis
Provider
Institute of Systems Biology
Class
SimulationAnalysis
Plugin
biouml.plugins.simulation (Simulation plug-in)

[edit] Description

Simulate model.

[edit] Parameters:

  • Model – Diagram with simulation model
  • Simulation engine name – Simulation engine name.
  • Simulation engine – Simulation engine
  • Skip points (expert) – Number of points to skip
  • Output start time (expert) – Output start time for non-uniform simulation
  • Simulation result – Path to simulation result
Retrieved from "https://wiki.biouml.org/index.php?title=Simulation_analysis&oldid=8785"
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