Difference between revisions of "Distinct TF classes (analysis)"
From BioUML platform
(Default analysis icon as separate file) |
(Automatic synchronization with BioUML) |
||
| Line 4: | Line 4: | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.DistinctTFClasses}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
Revision as of 13:38, 17 June 2013
- Analysis title
Distinct TF classes
- Provider
- Institute of Systems Biology
- Class
DistinctTFClasses- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Distinct TF classes: Identification of their binding regions as cisModules2 of their repeated tracks
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Minimal number of overlaps – Minimal number of overlaps
- Path to output folder – Output folder will be created under this location
