Difference between revisions of "Create matrix by mixture of normal components (analysis)"

Revision as of 12:19, 25 August 2015

Calculation of matrix by using mixture of normal components for maximal IPS scores

Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
TF class – TF class in Wingender classification (like '2.1.1.1.4')
Minimal region length – Minimal length of sequence region
P-value threshold – P-value threshold
Max iterations – Maximal number of iterations for algorithm
Number of matrices – How many matrices will be constructed
Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
Consensus – Specify the consensus of initial matrix
Matrix path – Specify the path to the initial matrix
Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
Matrix name prefix – All matrices will be created with given prefix

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 * '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
 * '''Minimal region length''' – Minimal length of sequence region
-* '''P-value''' – P-value
+* '''P-value threshold''' – P-value threshold
 * '''Max iterations''' – Maximal number of iterations for algorithm
 * '''Number of matrices''' – How many matrices will be constructed