Difference between revisions of "Track coverage (analysis)"
From BioUML platform
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
Revision as of 11:14, 31 May 2013
- Analysis title
- File:BSA-Track-coverage-icon.png Track coverage
- Provider
- Institute of Systems Biology
- Class
TrackCoverageAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Calculates the coverage of given track
Parameters:
- Input track – Track to calculate coverage for
- Sequences – Collection of sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Sequence collection
- Genome ID string – Something like 'hg18' or 'mm6'
- Window size – Size of the window to average the coverage
- Step – Number of bp to step (at least 1000)
- Output empty intervals – When checked, intervals without single site will appear in the output table as well
- Output table – Path to the output table
