Difference between revisions of "IPS ROC-curves (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
Revision as of 15:31, 10 June 2013
- Analysis title
- File:Binding-regions-IPS-ROC-curves-icon.png IPS ROC-curves
- Provider
- Institute of Systems Biology
- Class
IPSROCCurve- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
ROC-curves: influence of common score threshold on IPSSiteModel (or logIPSSiteModel) in merged binding regions
Parameters:
- Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
- Matrix – Path to positional weight matrix
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Log transformation – Check to consider log-models
- Output table – Table with charts will be created in this location
