Difference between revisions of "Locations of best sites (analysis)"

Revision as of 18:12, 9 July 2013

Analysis title

Locations of best sites

Provider

Institute of Systems Biology

Class

BestSiteLocations

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Best sites: location of best sites in single chip-seq track; summit(yes/no)

Parameters:

• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
• Is around summit – Is around summit
• Minimal region length – Minimal length of sequence region
• Matrix – Path to positional weight matrix
• Output table – Table with charts will be created in this location