Difference between revisions of "CRISPR Cas9 and specific oligonucleotides (analysis)"

Revision as of 16:17, 11 December 2014

Analysis title

CRISPR Cas9 and specific oligonucleotides

Provider

Institute of Systems Biology

Class

CrisprCas9AndOligths

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Identification of oligonucleotides specific to given gene

Parameters:

• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Gene type – Select gene type
• Gene name – Select gene name
• Length of each flank of gene – Length of each flank of gene
• Is long oligonucleotide (N)8-(N)12-NGG – Otherwise short olig (N)12-NGG
• Path to output folder – Output folder will be created under this location