Difference between revisions of "ROC-curves in overlapped ChIP-Seq peaks (analysis)"
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* '''Species''' – Select a taxonomical species | * '''Species''' – Select a taxonomical species | ||
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | * '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | ||
| − | * '''Matrix''' – Path to | + | * '''Matrix''' – Path to frequency matrix |
* '''Minimal region length''' – Minimal length of sequence region | * '''Minimal region length''' – Minimal length of sequence region | ||
* '''Is around summit''' – Is around summit | * '''Is around summit''' – Is around summit | ||
Latest revision as of 19:00, 13 February 2017
- Analysis title
ROC-curves in overlapped ChIP-Seq peaks
- Provider
- Institute of Systems Biology
- Class
ROCcurvesInOverlappedChipSeqPeaks- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Create ROC-curves in overlapped ChIP-Seq peaks (when there are several peaks sets for given Tf-class)
[edit] Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Matrix – Path to frequency matrix
- Minimal region length – Minimal length of sequence region
- Is around summit – Is around summit
- Types of site models – Select site models for comparative analysis
- Path to output folder – Output folder will be created under this location when it doesn't exist
