Difference between revisions of "Building Flux Balance DataTable (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:DAE-models-Building-Flux-Balance-DataTable-icon.png]] Building Flux Balance DataTable |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
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==== Description ==== | ==== Description ==== | ||
| − | + | This analysis constructs FBC data table for '''Flux Balance Constraint''' analysis. This table contains information about fluxes (reactions): lower and upper bound, objective function coefficients. If input diagram is ''sbml-fbc'', all data about fluxes is already stored in it and analysis just convert this information into the result table. If information for some fluxes is missed or diagram is not ''sbml-fbc'' default values specified in parameters will be added to the result table. | |
==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Diagram | + | * '''Diagram''' – Path to input diagram |
| − | * ''' | + | * '''Output path''' – Path to table with FBC data |
| + | * '''Lower bound''' – Default value of lower bound | ||
| + | * '''Equals''' – Default value of equals | ||
| + | * '''Upper bound''' – Default value of upper bound | ||
| + | * '''Objective function coefficient''' – Default objective function coefficient | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 19:00, 13 February 2017
- Analysis title
Building Flux Balance DataTable
- Provider
- Institute of Systems Biology
- Class
FbcBuilderDataTableAnalysis- Plugin
- biouml.plugins.fbc (Flux Balance)
Description
This analysis constructs FBC data table for Flux Balance Constraint analysis. This table contains information about fluxes (reactions): lower and upper bound, objective function coefficients. If input diagram is sbml-fbc, all data about fluxes is already stored in it and analysis just convert this information into the result table. If information for some fluxes is missed or diagram is not sbml-fbc default values specified in parameters will be added to the result table.
Parameters:
- Diagram – Path to input diagram
- Output path – Path to table with FBC data
- Lower bound – Default value of lower bound
- Equals – Default value of equals
- Upper bound – Default value of upper bound
- Objective function coefficient – Default objective function coefficient
