Difference between revisions of "Simulation analysis"
From BioUML platform
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* '''Simulation engine name''' – Simulation engine name. | * '''Simulation engine name''' – Simulation engine name. | ||
* '''Simulation engine''' – Simulation engine | * '''Simulation engine''' – Simulation engine | ||
| + | ** '''Initial time''' – Initial time. | ||
| + | ** '''Completion time''' – Completion time. | ||
| + | ** '''Time increment''' – Time increment. | ||
| + | ** '''Flat similar submodels''' – Flat submodels if possible. | ||
| + | ** '''Main engine''' – Main simulation engine. | ||
| + | *** '''engineName''' – engineName | ||
| + | *** '''initialTime''' – initialTime | ||
| + | *** '''completionTime''' – completionTime | ||
| + | *** '''timeIncrement''' – timeIncrement | ||
| + | *** '''Time scale''' – Time description. | ||
| + | *** '''solverName''' – solverName | ||
| + | *** '''simulatorOptions''' – simulatorOptions | ||
| + | **** '''Absolute tolerance''' – Absolute tolerance. | ||
| + | **** '''Relative tolerance''' – Relative tolerance. | ||
| + | **** '''Statistics mode''' – Statistics mode. | ||
| + | **** '''Integration method''' – Integration method (ADAMS or BDF) | ||
| + | **** '''Inner linear solver type''' – Inner linear solver type | ||
| + | **** '''Jacobian approximation type''' – Jacobian approximation type | ||
| + | **** '''Steps limit''' – Limitation for solver steps count | ||
| + | **** '''Minimum time step''' – Minimum time step. | ||
| + | **** '''Maximum time step inverted''' – 1 / maximum time step. | ||
| + | **** '''Mu''' – Upper bandwidth of Banded Jacobian | ||
| + | **** '''Ml''' – Lower bandwidth of Banded Jacobian | ||
| + | **** '''Detect incorrect numbers (NaNs and Infs''' – If true then simulation will end when NaN or Infinity encountered | ||
| + | ** '''Simulation engines''' – Agent engines. | ||
* '''Skip points''' (expert) – Number of points to skip | * '''Skip points''' (expert) – Number of points to skip | ||
* '''Output start time''' (expert) – Output start time for non-uniform simulation | * '''Output start time''' (expert) – Output start time for non-uniform simulation | ||
Revision as of 19:01, 13 February 2017
- Analysis title
Simulation analysis
- Provider
- Institute of Systems Biology
- Class
SimulationAnalysis- Plugin
- biouml.plugins.simulation (Simulation plug-in)
Description
Simulate model
Parameters:
- Model – Diagram with simulation model
- Simulation engine name – Simulation engine name.
- Simulation engine – Simulation engine
- Initial time – Initial time.
- Completion time – Completion time.
- Time increment – Time increment.
- Flat similar submodels – Flat submodels if possible.
- Main engine – Main simulation engine.
- engineName – engineName
- initialTime – initialTime
- completionTime – completionTime
- timeIncrement – timeIncrement
- Time scale – Time description.
- solverName – solverName
- simulatorOptions – simulatorOptions
- Absolute tolerance – Absolute tolerance.
- Relative tolerance – Relative tolerance.
- Statistics mode – Statistics mode.
- Integration method – Integration method (ADAMS or BDF)
- Inner linear solver type – Inner linear solver type
- Jacobian approximation type – Jacobian approximation type
- Steps limit – Limitation for solver steps count
- Minimum time step – Minimum time step.
- Maximum time step inverted – 1 / maximum time step.
- Mu – Upper bandwidth of Banded Jacobian
- Ml – Lower bandwidth of Banded Jacobian
- Detect incorrect numbers (NaNs and Infs – If true then simulation will end when NaN or Infinity encountered
- Simulation engines – Agent engines.
- Skip points (expert) – Number of points to skip
- Output start time (expert) – Output start time for non-uniform simulation
- Simulation result – Path to simulation result
