Difference between revisions of "Fastx clip"
From BioUML platform
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==Clipping Illustration== | ==Clipping Illustration== | ||
https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png | https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png | ||
| + | |||
| + | ==Clipping Example== | ||
| + | https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_example.png | ||
| + | |||
| + | In the above example: | ||
| + | * Sequence no. 1 was discarded since it wasn't clipped (i.e. didn't contain the adapter sequence). (Output parameter). | ||
| + | * Sequence no. 5 was discarded --- it's length (after clipping) was shorter than 15 nt (Minimum Sequence Length parameter). | ||
Latest revision as of 19:05, 25 March 2019
[edit] What it does
This tool clips adapters from the 3'-end of the sequences in a FASTA/FASTQ file.
[edit] Clipping Illustration
[edit] Clipping Example
https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_example.png
In the above example:
- Sequence no. 1 was discarded since it wasn't clipped (i.e. didn't contain the adapter sequence). (Output parameter).
- Sequence no. 5 was discarded --- it's length (after clipping) was shorter than 15 nt (Minimum Sequence Length parameter).
