Difference between revisions of "Sites Open Chromatin Statistics (analysis)"

Revision as of 18:14, 9 December 2020

Analysis title

Sites Open Chromatin Statistics

Provider

Institute of Systems Biology

Class

SitesOpenChromatin

Plugin

biouml.plugins.gtrd (GTRD)

Description

Getting Statistics of sites in open chromatin

Parameters:

• Input SQL ChIP Track – Input SQL ChIP Track
• Input SQL Dnase Track – Input Dnase ChIP Track
• Path to ChipTracks – Path to ChipTracks
• Folder names – Folder names
• prefix – write prefix of output file
• Number of threads – Number of threads
• More then 1 track – Choose if you need more then 1 track
• Record result to GTRD database – Record result to GTRD database
• write new table – record new table to GTRD database
• write data to existed table – record data to existed table in GTRD database
• nameOfExistedTable – nameOfExistedTable
• path to output file – choose folder for output file