ChIP-seq peak profile (analysis)
From BioUML platform
Revision as of 12:32, 16 May 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
- File:ChIP-seq-peak-profile-analysis-icon.png ChIP-seq peak profile
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis allows you to compute probability profiles for Chip-seq peaks.
Parameters:
- Peak track – Track with ChIP-seq peaks
- Tag track – Track with aligned tags (reads)
- Fragment size – Mean size of DNA fragments used in immunoprecipitation
- Sigma – Sigma parameter used to model peak shape
- Error rate – Error rate
- Profiled track – Profiled track
