Track coverage (analysis)

Analysis title

File:BSA-Track-coverage-icon.png Track coverage

Provider

Institute of Systems Biology

Class

TrackCoverageAnalysis

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Calculates the coverage of given track

Parameters:

• Input track – Track to calculate coverage for
• Sequences – Collection of sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Sequence collection
  • Genome ID string – Something like 'hg18' or 'mm6'
• Window size – Size of the window to average the coverage
• Step – Number of bp to step (at least 1000)
• Output empty intervals – When checked, intervals without single site will appear in the output table as well
• Output table – Path to the output table