Create matrix by mixture of normal components (analysis)

Analysis title

Create matrix by mixture of normal components

Provider

Institute of Systems Biology

Class

CreateMatrixByMixture

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Calculation of matrix by using mixture of normal components for maximal IPS scores

Parameters:

• Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
• TF class – TF class in Wingender classification (like '2.1.1.1.4')
• Minimal region length – Minimal length of sequence region
• P-value threshold – P-value threshold
• Max iterations – Maximal number of iterations for algorithm
• Number of matrices – How many matrices will be constructed
• Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
• Consensus – Specify the consensus of initial matrix
• Matrix path – Specify the path to the initial matrix
• Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
• Matrix name prefix – All matrices will be created with given prefix