Fantom analysis
From BioUML platform
Revision as of 18:14, 9 December 2020 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Fantom analysis
- Provider
- Institute of Systems Biology
- Class
FantomAnalysis- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Analysis of FANTOM expression values by using GTRD peaks
Parameters:
- Option – Please, select option (i.e. select the concrete session of given analysis).
- Parameters for OPTION_01 – Parameters for OPTION_01
- Path to input folder – Path to input folder
- Parameters for OPTION_02 – Parameters for OPTION_02
- Path to folder with tracks – Path to folder with tracks
- Track names – Please, select track names
- Path to file – Path to file
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Promoter regions – Promoter regions
- Parameters for OPTION_03 – Parameters for OPTION_03
- Path to input folder – Path to input folder
- Parameters for OPTION_04 – Parameters for OPTION_04
- Path to file – Path to file
- Path to input folder – Path to input folder
- Cell line – Cell line
- Path to output folder – Path to output folder
