ROC-curves in overlapped ChIP-Seq peaks (analysis)

Analysis title

ROC-curves in overlapped ChIP-Seq peaks

Provider

Institute of Systems Biology

Class

ROCcurvesInOverlappedChipSeqPeaks

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Create ROC-curves in overlapped ChIP-Seq peaks (when there are several peaks sets for given Tf-class)

Parameters:

• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
• Species – Select a taxonomical species
• TF class – TF class in Wingender classification (like '2.1.1.1.4')
• Matrix – Path to positional weight matrix
• Minimal region length – Minimal length of sequence region
• Is around summit – Is around summit
• Types of site models – Select site models for comparative analysis
• Path to output folder – Output folder will be created under this location