Create matrix by mixture of normal components (analysis)
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Revision as of 17:41, 14 June 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
- File:Binding-regions-Create-matrix-by-mixture-of-normal-components-icon.png Create matrix by mixture of normal components
- Provider
- Institute of Systems Biology
- Class
CreateMatrixByMixture- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Calculation of matrix by using mixture of normal components for maximal IPS scores
Parameters:
- Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Minimal region length – Minimal length of sequence region
- P-value – P-value
- Max iterations – Number of iterations for algorithm
- Number of matrices – How many matrices will be constructed
- Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
- Consensus – Specify the consensus of initial matrix
- Matrix path – Specify the path to the initial matrix
- Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
- Matrix name prefix – All matrices will be created with given prefix
