Binding regions summary (analysis)

Analysis title

Binding regions summary

Provider

Institute of Systems Biology

Class

BindingRegionsSummary

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Summary of binding regions, density of overlaps (creation of tables: 'summaryOfBindingRegions', 'densityOfBindingRegionOverlaps', 'chart_densityOfBindingRegionOverlaps')

Parameters:

• Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
• TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
• Path to output folder – Output folder will be created under this location