Common and IPS scores correlation (analysis)
From BioUML platform
Revision as of 12:59, 27 June 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Common and IPS scores correlation
- Provider
- Institute of Systems Biology
- Class
CommonAndIPSCorrelation- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Correlation between common score and IPS-score for best IPS-sites in single Chip-Seq track
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
- Matrix – Path to positional weight matrix
- Minimal region length – Minimal length of sequence region
- Output table – Table with charts will be created in this location
