Locations of best sites (analysis)
From BioUML platform
Revision as of 18:12, 9 July 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Locations of best sites
- Provider
- Institute of Systems Biology
- Class
BestSiteLocations- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Best sites: location of best sites in single chip-seq track; summit(yes/no)
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
- Is around summit – Is around summit
- Minimal region length – Minimal length of sequence region
- Matrix – Path to positional weight matrix
- Output table – Table with charts will be created in this location
