Simulation analysis

Analysis title

Simulation analysis

Provider

Institute of Systems Biology

Class

SimulationAnalysis

Plugin

biouml.plugins.simulation (Simulation plug-in)

Description

Simulate model

Parameters:

• Model – Diagram with simulation model
• Simulation engine name – Simulation engine name.
• Simulation engine – Simulation engine
  • Initial time – Initial time.
  • Completion time – Completion time.
  • Time increment – Time increment.
  • Flat similar submodels – Flat submodels if possible.
  • Main engine – Main simulation engine.
    • engineName – engineName
    • initialTime – initialTime
    • completionTime – completionTime
    • timeIncrement – timeIncrement
    • Time scale – Time description.
    • solverName – solverName
    • simulatorOptions – simulatorOptions
      • Absolute tolerance – Absolute tolerance.
      • Relative tolerance – Relative tolerance.
      • Statistics mode – Statistics mode.
      • Integration method – Integration method (ADAMS or BDF)
      • Inner linear solver type – Inner linear solver type
      • Jacobian approximation type – Jacobian approximation type
      • Steps limit – Limitation for solver steps count
      • Minimum time step – Minimum time step.
      • Maximum time step inverted – 1 / maximum time step.
      • Mu – Upper bandwidth of Banded Jacobian
      • Ml – Lower bandwidth of Banded Jacobian
      • Detect incorrect numbers (NaNs and Infs – If true then simulation will end when NaN or Infinity encountered
  • Simulation engines – Agent engines.
• Skip points (expert) – Number of points to skip
• Output start time (expert) – Output start time for non-uniform simulation
• Simulation result – Path to simulation result