Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow)

Workflow title

Identify enriched motifs in tissue specific promoters (TRANSFAC(R))

Provider

geneXplain GmbH

Workflow overview

Parameters

Input Yes genes

Species

Sequence source

Tissue_condition

Select tissue condition

TSS selction

Profile

Filter by Coefficient

The resulting table "Enriched motifs MEALR" will be filtered by the column Coefficient. The default filter is set to have 75% of true discovery rate, TDR. For 90% TDR, you can set this field to 0,270 and for 50% TDR to 0.05593. The filtered sited are used for the resulting visualization on genome browser.

Result folder