Merge binding regions for cell-lines (analysis)
From BioUML platform
- Analysis title
Merge binding regions for cell-lines
- Provider
- Institute of Systems Biology
- Class
MergeCellLineBindingRegions- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Create cell-specific tracks with merged binding regions (creation of tables: 'bindingRegions_in_[CellLine*]')
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
- Chromosome gaps table – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis)
- Path to output folder – Output folder will be created under this location when it doesn't exist
