Process track with sites (analysis)
From BioUML platform
- Analysis title
- Process track with sites
- Provider
- Institute of Systems Biology
- Class
ProcessTrack
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.
Parameters:
- Source track – Track you want to process
- Sequences – Sequences to use
- Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
- Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
- Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
- Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
- Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
- Minimal site size – Sites shorter than specified size will be removed from output
- Output track – Path for processed track