Difference between revisions of "Isoform TE (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | Translation efficency of splice isoforms | + | Translation efficency of splice isoforms. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Ribosome profiling (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Isoform TE
- Provider
- Institute of Systems Biology
- Class
IsoformTEAnalysis- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
[edit] Description
Translation efficency of splice isoforms.
[edit] Parameters:
- Ribo-seq alignments – Alignments of ribo-seq reads to the set of coding sequences, should include unmapped reads and sorted by read name
- mRNA-seq alignments – Alignments of mRNA-seq reads to the set of transcripts, should include unmapped reads and sorted by read name
- Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- cdsOverhangs – cdsOverhangs
- Number of samples (expert) – Number of samples taken by gibbs sampler
- Output table – Output table
