Biouml.plugins.bindingregions (plugin)

ID

biouml.plugins.bindingregions

Name

Binding-regions related analyses

Provider

Institute of Systems Biology

Version

0.9.4

Analysis methods

Analysis methods defined in this plugin:

• Analysis of Cis-Regulatory Modules
• Analysis of five site models
• Binding regions summary
• ChIP-Seq characteristics distribution
• Cis-module identification
• Common and IPS scores correlation
• Correlations of best sites
• Count olig frequencies
• Create matrix by mixture of normal components
• Create matrix by mixture of normal components (ChIP-seq)
• Distinct TF classes
• Gathering genome statistics
• IPS ROC-curves
• IPS prediction
• IPS-scores in SNPs
• Locations of best sites
• Merge binding regions for cell-lines
• Mixture of normal components
• Non-merged ChIP-Seq tracks summary
• ROC curves for best sites union
• SNP regions in genome
• SNPs in binding regions