Convert genomic BAM to transcriptomic (analysis)
From BioUML platform
- Analysis title
Convert genomic BAM to transcriptomic
- Provider
- Institute of Systems Biology
- Class
GenomicAlignmentsToTranscriptomic- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
Convert BAM alignments on genome to alignments on transcriptome.
Parameters:
- Input bam track – Input bam track
- Transcripts – Transcripts
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Convert to CDS offsets – Convert to CDS offsets
- CDS overhangs – CDS overhangs
- Output bam track – Output bam track
- Output sequences – Output sequences
