Biouml.plugins.bindingregions (plugin)
From BioUML platform
Revision as of 11:21, 13 January 2014 by BioUML wiki Bot (Talk | contribs)
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.6
Extension points
Extension points defined in this plugin:
Analysis methods
Analysis methods defined in this plugin:
Analysis of Binding Regions
- Analysis of Cis-Regulatory Modules
- Binding regions summary
- ChIP-Seq characteristics distribution
- Cis-module identification
- Common and IPS scores correlation
- Correlations of best sites
- Count olig frequencies
- Create matrix by mixture of normal components
- Create matrix by mixture of normal components (ChIP-seq)
- Distinct TF classes
- Gathering genome statistics
- IPS ROC-curves
- IPS prediction
- IPS-scores in SNPs
- Identical best site ROC curves
- Locations of best sites
- Merge binding regions for cell-lines
- Mixture of normal components
- Non-merged ChIP-Seq tracks summary
- Peak finders comparison
- ROC curves for best sites union
- ROC curves in grouped peaks
- SNP regions in genome
- SNPs in binding regions
- Summary on AUCs
